Working with Infinium Genotype Data – Plant Breeding and Genomics

Authors:

Allen Van Deynze, University of California, Davis; Kelly Zarka, Michigan State University

This page provides video and an audio-transcript of Dr. Allen van Deynze’s workshop “Working with Infinium Genotype Data”, originally presented at the SolCAP workshop at the Potato Association of America meeting in August 2010. This session focuses on highly parallel genotyping tools as we move away from scoring sequence polymorphism as a “band on a gel.”

This session will focus on highly parallel genotyping tools. We are moving away from scoring sequence polymorphism as a “band on a gel”. We will present the design of the SolCAP/Illumina consortium tool, discuss the resulting data format, and discuss quality control.

You can view the webinar below or at the SolCAP website.

View the webinar transcript.

If you experience problems viewing this video connect to our YouTube channel or see the YouTube troubleshooting guide.

Presenter: Allen Van Deynze, University of California, Davis

View other SolCAP webinars

External Links

Van Deynze, A. 2010. Working with Infinium genotype data. [Online seminar]. Solanaceae Coordinated Agricultural Project. Available at: solcap.msu.edu/infinium_genotype_webinar.shtml (verified 11 May 2012).

Funding Statement

Development of this page was supported in part by the National Institute of Food and Agriculture (NIFA) Solanaceae Coordinated Agricultural Project, agreement 2009-85606-05673, administered by Michigan State University. Any opinions, findings, conclusions, or recommendations expressed in this publication are those of the author(s) and do not necessarily reflect the view of the United States Department of Agriculture.

Mention of specific companies is not intended for promotional purposes.

PBGworks 884